Burkholderia mallei Turkey5

Strain Overview
Organism Name Burkholderia mallei Turkey5 - Assembly GCF_001279195.1
Species Burkholderia mallei
Strain Turkey5
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4578
Partial Genes 226
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds 2
Contigs 239
Contig N50 38617
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02798126
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 4578
CDS 4523
pseudo 323
tRNA 51
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2042
Cytoplasmic Membrane 899
Periplasmic 140
Outer Membrane 90
Extracellular 67
Unknown 1224
Unknown (This protein may have multiple localization sites) 127
Flagellar 23
Fimbrial 3
Host Associated 2
T3SS 2

Replicons

Name Length GC
Burkholderia mallei strain Turkey5 genomic scaffold scaffold1, whole genome shotgun sequence. 4826955 bp 68.3%
Replicon details
Burkholderia mallei strain Turkey5 genomic scaffold scaffold2, whole genome shotgun sequence. 618280 bp 67.7%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF