Strain Overview | |
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Organism Name | Burkholderia mallei Turkey5 - Assembly GCF_001279195.1 |
Species | Burkholderia mallei |
Strain | Turkey5 |
Description/Title | Microbe sample from Burkholderia mallei |
Annotated Genes | 4578 |
Partial Genes | 226 |
Host Information | |
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Host Species Taxonomic Name | Homo sapiens |
Host Species Common Name | human |
Host Species Taxonomy ID | 9606 |
Geographic Location | |
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Location Name | Turkey: Ankara |
Isolation Source | missing |
Sample Provider | |
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Name | Hajnalka Daligault |
hajkis@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 2 |
Contigs | 239 |
Contig N50 | 38617 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02798126 |
NCBI Taxonomy ID | 13373 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 4578 |
CDS | 4523 |
pseudo | 323 |
tRNA | 51 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2042 |
Cytoplasmic Membrane | 899 |
Periplasmic | 140 |
Outer Membrane | 90 |
Extracellular | 67 |
Unknown | 1224 |
Unknown (This protein may have multiple localization sites) | 127 |
Flagellar | 23 |
Fimbrial | 3 |
Host Associated | 2 |
T3SS | 2 |
Name | Length | GC | |
---|---|---|---|
Burkholderia mallei strain Turkey5 genomic scaffold scaffold1, whole genome shotgun sequence. | 4826955 bp | 68.3% |
Replicon details
|
Burkholderia mallei strain Turkey5 genomic scaffold scaffold2, whole genome shotgun sequence. | 618280 bp | 67.7% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |