Strain Overview | |
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Organism Name | Burkholderia mallei Turkey7 - Assembly GCF_001279185.1 |
Species | Burkholderia mallei |
Strain | Turkey7 |
Description/Title | Microbe sample from Burkholderia mallei |
Annotated Genes | 4770 |
Partial Genes | 176 |
Host Information | |
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Host Species Taxonomic Name | horse |
Host Species Common Name | horse |
Geographic Location | |
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Location Name | Turkey: Ankara |
Isolation Source | missing |
Sample Provider | |
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Name | Hajnalka Daligault |
hajkis@lanl.gov | |
Institution | Los Alamos National Laboratory |
Date Collected |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | 3 |
Contigs | 141 |
Contig N50 | 81940 |
Assembly Level | Scaffold |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN02821334 |
NCBI Taxonomy ID | 13373 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 4770 |
CDS | 4711 |
pseudo | 269 |
tRNA | 53 |
rRNA | 5 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2146 |
Cytoplasmic Membrane | 937 |
Periplasmic | 151 |
Outer Membrane | 97 |
Extracellular | 69 |
Unknown | 1246 |
Unknown (This protein may have multiple localization sites) | 133 |
Flagellar | 23 |
Fimbrial | 3 |
Host Associated | 2 |
T3SS | 3 |
Name | Length | GC | |
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Burkholderia mallei strain Turkey7 genomic scaffold scaffold1, whole genome shotgun sequence. | 2026790 bp | 69.0% |
Replicon details
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Burkholderia mallei strain Turkey7 genomic scaffold scaffold2, whole genome shotgun sequence. | 3497432 bp | 68.0% |
Replicon details
|
Burkholderia mallei strain Turkey7 genomic scaffold scaffold3, whole genome shotgun sequence. | 145339 bp | 67.6% |
Replicon details
|
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |