| Strain Overview | |
|---|---|
| Organism Name | Burkholderia mallei Turkey6 - Assembly GCF_001279175.1 |
| Species | Burkholderia mallei |
| Strain | Turkey6 |
| Description/Title | Microbe sample from Burkholderia mallei |
| Annotated Genes | 4552 |
| Partial Genes | 224 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | horse |
| Host Species Common Name | horse |
| Geographic Location | |
|---|---|
| Location Name | Turkey: Ankara |
| Isolation Source | missing |
| Sample Provider | |
|---|---|
| Name | Hajnalka Daligault |
| hajkis@lanl.gov | |
| Institution | Los Alamos National Laboratory |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | 3 |
| Contigs | 229 |
| Contig N50 | 43992 |
| Assembly Level | Scaffold |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02798092 |
| NCBI Taxonomy ID | 13373 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 4552 |
| CDS | 4489 |
| pseudo | 330 |
| tRNA | 56 |
| rRNA | 6 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2005 |
| Cytoplasmic Membrane | 902 |
| Periplasmic | 146 |
| Outer Membrane | 91 |
| Extracellular | 66 |
| Unknown | 1217 |
| Unknown (This protein may have multiple localization sites) | 125 |
| Flagellar | 23 |
| Fimbrial | 3 |
| Host Associated | 2 |
| T3SS | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia mallei strain Turkey6 genomic scaffold scaffold1, whole genome shotgun sequence. | 3349213 bp | 67.9% |
Replicon details
|
| Burkholderia mallei strain Turkey6 genomic scaffold scaffold2, whole genome shotgun sequence. | 2114121 bp | 68.7% |
Replicon details
|
| Burkholderia mallei strain Turkey6 genomic scaffold scaffold3, whole genome shotgun sequence. | 5380 bp | 72.5% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |