Burkholderia mallei Turkey8

Strain Overview
Organism Name Burkholderia mallei Turkey8 - Assembly GCF_001279165.1
Species Burkholderia mallei
Strain Turkey8
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4738
Partial Genes 66
Host Information
Host Species Taxonomic Name horse
Host Species Common Name horse
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001279165.1
Assembly Status latest
Scaffolds 2
Contigs 12
Contig N50 774772
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN02798149
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 4738
CDS 4677
pseudo 240
tRNA 54
rRNA 6
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2111
Cytoplasmic Membrane 925
Periplasmic 150
Outer Membrane 95
Extracellular 69
Unknown 1261
Unknown (This protein may have multiple localization sites) 134
Flagellar 23
Fimbrial 3
Host Associated 2
T3SS 3

Replicons

Name Length GC
Burkholderia mallei strain Turkey8 genomic scaffold scaffold1, whole genome shotgun sequence. 3459535 bp 68.2%
Replicon details
Burkholderia mallei strain Turkey8 genomic scaffold scaffold2, whole genome shotgun sequence. 2117314 bp 69.0%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF