Burkholderia mallei Turkey4

Strain Overview
Organism Name Burkholderia mallei Turkey4 - Assembly GCF_001278925.1
Species Burkholderia mallei
Strain Turkey4
Description/Title Microbe sample from Burkholderia mallei
Annotated Genes 4574
Partial Genes 353
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Turkey: Ankara
Isolation Source missing
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 296
Contig N50 28772
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02797575
NCBI Taxonomy ID 13373
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 4574
CDS 4517
pseudo 373
tRNA 52
rRNA 4
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2008
Cytoplasmic Membrane 922
Periplasmic 151
Outer Membrane 90
Extracellular 68
Unknown 1212
Unknown (This protein may have multiple localization sites) 131
Flagellar 23
Fimbrial 3
Host Associated 2
T3SS 2

Replicons

296 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF