| Strain Overview | |
|---|---|
| Organism Name | Burkholderia mallei 2002734306 |
| Species | Burkholderia mallei |
| Strain | 2002734306 |
| Description/Title | Microbe sample Burkholderia mallei 2002734306 |
| Annotated Genes | 4659 |
| Partial Genes | 49 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | United Kingdom |
| Isolation Source | Unknown |
| Sample Provider | |
|---|---|
| Name | Shannon Johnson |
| shannonj@lanl.gov | |
| Institution | Los Alamos National Laboratory |
| Date Collected | Unknown |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03120828 |
| NCBI Taxonomy ID | 13373 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Genome Browsers* | |
|---|---|
| Burkholderia mallei strain 2002734306 chromosome I, complete sequence. | |
| Burkholderia mallei strain 2002734306 chromosome II, complete sequence. |
| Feature | Count |
|---|---|
| gene | 4659 |
| CDS | 4594 |
| pseudo | 159 |
| tRNA | 54 |
| rRNA | 10 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2109 |
| Cytoplasmic Membrane | 904 |
| Periplasmic | 154 |
| Outer Membrane | 97 |
| Extracellular | 66 |
| Unknown | 1198 |
| Unknown (This protein may have multiple localization sites) | 127 |
| Flagellar | 22 |
| Fimbrial | 4 |
| Host Associated | 2 |
| T3SS | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia mallei strain 2002734306 chromosome I, complete sequence. | 3550623 bp | 68.2% |
Replicon details
|
| Burkholderia mallei strain 2002734306 chromosome II, complete sequence. | 1858539 bp | 68.7% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |