Strain Overview | |
---|---|
Organism Name | Burkholderia lata LK13 |
Species | Burkholderia lata |
Strain | LK13 |
Description/Title | Microbe sample from Burkholderia lata |
Annotated Genes | 7567 |
Partial Genes | 201 |
Host Information |
---|
Geographic Location | |
---|---|
Location Name | Malaysia: Malacca |
Isolation Source | Plant |
Sample Provider | |
---|---|
Name | Xin Yue Chan |
xinyuechan@gmail.com | |
Institution | University of Malaya |
Date Collected | 06-Jul-2010 |
Database | Scheme | Sequence Type | Alleles | |
---|---|---|---|---|
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
---|---|
Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 185 |
Contig N50 | 117045 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
---|---|
NCBI BioSample Accession | SAMN03744440 |
NCBI Taxonomy ID | 482957 |
NCBI Bioprojects |
Related Data | |
---|---|
Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
---|---|
gene | 7567 |
CDS | 7494 |
pseudo | 196 |
tRNA | 62 |
rRNA | 9 |
ncRNA | 1 |
Localization | Count |
---|---|
Cytoplasmic | 3244 |
Cytoplasmic Membrane | 1613 |
Periplasmic | 254 |
Outer Membrane | 188 |
Extracellular | 101 |
Unknown | 1861 |
Unknown (This protein may have multiple localization sites) | 239 |
Flagellar | 8 |
Fimbrial | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |