Burkholderia gladioli NGJ1

Strain Overview
Organism Name Burkholderia gladioli NGJ1
Species Burkholderia gladioli
Strain NGJ1
Description/Title Microbe sample from Burkholderia gladioli
Annotated Genes 6445
Partial Genes 231
Host Information
Host Species Taxonomic Name Oryza sativa
Host Species Common Name Oryza sativa
Geographic Location
Location Name India
Isolation Source Surface sterilized rice seed
Sample Provider
Name Gopaljee Jha
E-mail jmsgopal@nipgr.ac.in
Institution National Institute of Plant Genome Research
Date Collected Mar-2013

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 155
Contig N50 283251
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03764558
NCBI Taxonomy ID 28095
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6445
CDS 6388
pseudo 343
tRNA 53
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2813
Cytoplasmic Membrane 1382
Periplasmic 189
Outer Membrane 155
Extracellular 106
Unknown 1519
Unknown (This protein may have multiple localization sites) 223
Flagellar 17
Fimbrial 5
Host Associated 1
T3SS 1

Replicons

155 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF