Strain Overview | |
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Organism Name | Burkholderia gladioli NGJ1 |
Species | Burkholderia gladioli |
Strain | NGJ1 |
Description/Title | Microbe sample from Burkholderia gladioli |
Annotated Genes | 6445 |
Partial Genes | 231 |
Host Information | |
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Host Species Taxonomic Name | Oryza sativa |
Host Species Common Name | Oryza sativa |
Geographic Location | |
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Location Name | India |
Isolation Source | Surface sterilized rice seed |
Sample Provider | |
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Name | Gopaljee Jha |
jmsgopal@nipgr.ac.in | |
Institution | National Institute of Plant Genome Research |
Date Collected | Mar-2013 |
Database | Scheme | Sequence Type | Alleles | |
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Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). |
Assembly | |
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Assembly DB |
RefSeq
|
Assembly Accession | Assembly Status | latest |
Scaffolds | |
Contigs | 155 |
Contig N50 | 283251 |
Assembly Level | Contig |
Percent GC |
Cross-References | |
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NCBI BioSample Accession | SAMN03764558 |
NCBI Taxonomy ID | 28095 |
NCBI Bioprojects |
Related Data | |
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Additional Genome Project Info | |
Sequencing Information | |
Genome Assembly Information |
Feature | Count |
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gene | 6445 |
CDS | 6388 |
pseudo | 343 |
tRNA | 53 |
rRNA | 3 |
ncRNA | 1 |
Localization | Count |
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Cytoplasmic | 2813 |
Cytoplasmic Membrane | 1382 |
Periplasmic | 189 |
Outer Membrane | 155 |
Extracellular | 106 |
Unknown | 1519 |
Unknown (This protein may have multiple localization sites) | 223 |
Flagellar | 17 |
Fimbrial | 5 |
Host Associated | 1 |
T3SS | 1 |
Genomic | ORF DNA | Intergenic | Amino Acid |
TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |