Burkholderia diffusa MSMB376WGS

Strain Overview
Organism Name Burkholderia diffusa MSMB376WGS
Species Burkholderia diffusa
Strain MSMB376WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 6067
Partial Genes 94
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source water
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2008

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001532285.1
Assembly Status latest
Scaffolds
Contigs 67
Contig N50 259999
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449598
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6067
CDS 6002
pseudo 98
tRNA 55
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2689
Cytoplasmic Membrane 1320
Periplasmic 227
Outer Membrane 136
Extracellular 93
Unknown 1373
Unknown (This protein may have multiple localization sites) 168
Flagellar 38
Fimbrial 10
T3SS 2

Replicons

67 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF