Burkholderia diffusa MSMB378WGS

Strain Overview
Organism Name Burkholderia diffusa MSMB378WGS
Species Burkholderia diffusa
Strain MSMB378WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 6057
Partial Genes 92
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source water
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2008

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001532105.1
Assembly Status latest
Scaffolds
Contigs 70
Contig N50 259999
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449600
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6057
CDS 5992
pseudo 91
tRNA 55
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2689
Cytoplasmic Membrane 1326
Periplasmic 227
Outer Membrane 136
Extracellular 92
Unknown 1359
Unknown (This protein may have multiple localization sites) 167
Flagellar 38
Fimbrial 10
T3SS 2

Replicons

70 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF