Burkholderia diffusa MSMB1544

Strain Overview
Organism Name Burkholderia diffusa MSMB1544
Species Burkholderia diffusa
Strain MSMB1544
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 5984
Partial Genes 95
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001527605.1
Assembly Status latest
Scaffolds
Contigs 69
Contig N50 269568
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449326
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5984
CDS 5921
pseudo 102
tRNA 53
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2619
Cytoplasmic Membrane 1300
Periplasmic 224
Outer Membrane 136
Extracellular 93
Unknown 1384
Unknown (This protein may have multiple localization sites) 169
Flagellar 40
Fimbrial 12
T3SS 4

Replicons

69 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF