Burkholderia diffusa INT4-BP16

Strain Overview
Organism Name Burkholderia diffusa INT4-BP16
Species Burkholderia diffusa
Strain INT4-BP16
Description/Title Pathogen: environmental/food/other sample from Burkholderia diffusa
Annotated Genes 5954
Partial Genes 82
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001523065.1
Assembly Status latest
Scaffolds
Contigs 68
Contig N50 236846
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449181
NCBI Taxonomy ID 488732
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 5954
CDS 5889
pseudo 85
tRNA 55
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2630
Cytoplasmic Membrane 1297
Periplasmic 218
Outer Membrane 136
Extracellular 82
Unknown 1366
Unknown (This protein may have multiple localization sites) 164
Flagellar 23
Fimbrial 9
T3SS 2

Replicons

68 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF