| Strain Overview | |
|---|---|
| Organism Name | Burkholderia contaminans MS14 |
| Species | Burkholderia contaminans |
| Strain | MS14 |
| Description/Title | MIGS Cultured Bacterial/Archaeal sample from Burkholderia contaminans |
| Annotated Genes | 7476 |
| Partial Genes | 74 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | USA |
| Isolation Source | Soil |
| Latitude/Longitude | 33.80 N 90.34 W |
| Sample Provider | |
|---|---|
| Name | PENG DENG |
| dengpeng@deng-peng.com | |
| Institution | Mississippi state university |
| Date Collected | 2005 |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03135394 |
| NCBI Taxonomy ID | 488447 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7476 |
| CDS | 7390 |
| pseudo | 100 |
| tRNA | 69 |
| rRNA | 15 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3214 |
| Cytoplasmic Membrane | 1606 |
| Periplasmic | 243 |
| Outer Membrane | 171 |
| Extracellular | 86 |
| Unknown | 1863 |
| Unknown (This protein may have multiple localization sites) | 211 |
| Flagellar | 27 |
| Fimbrial | 4 |
| T3SS | 5 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia contaminans strain MS14 chromosome 1, complete sequence. | 3522585 bp | 66.9% |
Replicon details
|
| Burkholderia contaminans strain MS14 chromosome 2, complete sequence. | 3358952 bp | 66.3% |
Replicon details
|
| Burkholderia contaminans strain MS14 chromosome 3, complete sequence. | 1627712 bp | 65.5% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |