| Strain Overview | |
|---|---|
| Organism Name | Burkholderia contaminans LMG 23361 - Assembly GCF_000987075.1 |
| Species | Burkholderia contaminans |
| Strain | LMG 23361 |
| Description/Title | General Sample for Burkholderia contaminans LMG 23361 |
| Annotated Genes | 8137 |
| Partial Genes | 102 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | Spain |
| Isolation Source | Non cystic fibrosis sputum |
| Sample Provider | |
|---|---|
| Name | Silvia Cardona |
| cardona@cc.umanitoba.ca | |
| Institution | MICH Next Generation Sequencing Platform |
| Date Collected |
| Database | Scheme | Sequence Type | Alleles | |
|---|---|---|---|---|
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 18 |
| Contig N50 | 1108159 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN02402687 |
| NCBI Taxonomy ID | 1334628 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 8137 |
| CDS | 8038 |
| pseudo | 157 |
| tRNA | 72 |
| rRNA | 25 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3414 |
| Cytoplasmic Membrane | 1687 |
| Periplasmic | 257 |
| Outer Membrane | 176 |
| Extracellular | 98 |
| Unknown | 2162 |
| Unknown (This protein may have multiple localization sites) | 248 |
| Flagellar | 24 |
| Fimbrial | 5 |
| T3SS | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |