Burkholderia contaminans FFH2055

Strain Overview
Organism Name Burkholderia contaminans FFH2055
Species Burkholderia contaminans
Strain FFH2055
Description/Title General Sample for Burkholderia contaminans FFH2055
Annotated Genes 7196
Partial Genes 73
Host Information
Host Species Taxonomic Name
Geographic Location
Location Name Argentina
Isolation Source Sputum of cystic fibrosis patient, Hospital de Niños Ricardo Gutierrez
Sample Provider
Name Silvia Cardona
E-mail cardona@cc.umanitoba.ca
Institution MICH Next Generation Sequencing Platform
Date Collected 25-Jul-2005

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000987055.1
Assembly Status latest
Scaffolds
Contigs 8
Contig N50 1403009
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN02402688
NCBI Taxonomy ID 1423419
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7196
CDS 7109
pseudo 101
tRNA 67
rRNA 18
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3103
Cytoplasmic Membrane 1542
Periplasmic 236
Outer Membrane 168
Extracellular 78
Unknown 1768
Unknown (This protein may have multiple localization sites) 218
Flagellar 25
Fimbrial 2
T3SS 3

Replicons

8 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF