Burkholderia cepacia MSMB648WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB648WGS
Species Burkholderia cepacia
Strain MSMB648WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7559
Partial Genes 118
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1612
gltB
693		 gyrB
1028		 recA
551		 atpD
6		 lepA
591		 phaC
488		 trpB
50
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001532955.1
Assembly Status latest
Scaffolds
Contigs 89
Contig N50 230421
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449618
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7559
CDS 7492
pseudo 112
tRNA 60
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3215
Cytoplasmic Membrane 1573
Periplasmic 251
Outer Membrane 179
Extracellular 107
Unknown 1946
Unknown (This protein may have multiple localization sites) 226
Flagellar 11
Fimbrial 7

Replicons

89 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF