Burkholderia cepacia MSMB2210WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB2210WGS
Species Burkholderia cepacia
Strain MSMB2210WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7369
Partial Genes 116
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1580
gltB
195		 gyrB
1053		 phaC
1		 lepA
1		 atpD
530		 recA
1		 trpB
388
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001531905.1
Assembly Status latest
Scaffolds
Contigs 82
Contig N50 278014
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449557
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7369
CDS 7299
pseudo 120
tRNA 61
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3153
Cytoplasmic Membrane 1602
Periplasmic 239
Outer Membrane 181
Extracellular 101
Unknown 1799
Unknown (This protein may have multiple localization sites) 230
Flagellar 10
Fimbrial 2

Replicons

82 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF