Burkholderia cepacia MSMB1224WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1224WGS
Species Burkholderia cepacia
Strain MSMB1224WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7408
Partial Genes 106
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1593
gyrB
1049
lepA
1
phaC
496
recA
37
gltB
704
atpD
2
trpB
48
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 72
Contig N50 242091
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449555
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7408
CDS 7345
pseudo 113
tRNA 56
rRNA 3
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3177
Cytoplasmic Membrane 1588
Periplasmic 247
Outer Membrane 189
Extracellular 105
Unknown 1827
Unknown (This protein may have multiple localization sites) 220
Flagellar 21
Fimbrial 5

Replicons

72 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF