Burkholderia cepacia MSMB2095WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB2095WGS
Species Burkholderia cepacia
Strain MSMB2095WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7565
Partial Genes 119
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2013

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1605
gltB
195
atpD
66
trpB
645
lepA
659
recA
103
gyrB
1055
phaC
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 82
Contig N50 314289
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449532
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7565
CDS 7500
pseudo 128
tRNA 58
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3220
Cytoplasmic Membrane 1627
Periplasmic 245
Outer Membrane 192
Extracellular 107
Unknown 1877
Unknown (This protein may have multiple localization sites) 240
Flagellar 10
Fimbrial 3

Replicons

82 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF