Burkholderia cepacia MSMB1331WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1331WGS
Species Burkholderia cepacia
Strain MSMB1331WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 6286
Partial Genes 66
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1602
trpB
53
phaC
3
lepA
595
recA
103
gyrB
1031
gltB
455
atpD
235
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 43
Contig N50 411782
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449468
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6286
CDS 6215
pseudo 71
tRNA 61
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2701
Cytoplasmic Membrane 1356
Periplasmic 218
Outer Membrane 153
Extracellular 81
Unknown 1525
Unknown (This protein may have multiple localization sites) 188
Flagellar 8
Fimbrial 2

Replicons

43 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF