Burkholderia cepacia MSMB1486WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1486WGS
Species Burkholderia cepacia
Strain MSMB1486WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7544
Partial Genes 124
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1609
recA
373		 atpD
525		 gyrB
1032		 gltB
696		 trpB
634		 lepA
648		 phaC
101
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001530185.1
Assembly Status latest
Scaffolds
Contigs 83
Contig N50 304547
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449485
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7544
CDS 7475
pseudo 122
tRNA 59
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3214
Cytoplasmic Membrane 1646
Periplasmic 240
Outer Membrane 187
Extracellular 104
Unknown 1873
Unknown (This protein may have multiple localization sites) 217
Flagellar 11
Fimbrial 8

Replicons

83 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF