Burkholderia cepacia MSMB1337WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1337WGS
Species Burkholderia cepacia
Strain MSMB1337WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7354
Partial Genes 103
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1602
phaC
3		 gltB
455		 recA
103		 atpD
235		 gyrB
1031		 trpB
53		 lepA
595
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001530105.1
Assembly Status latest
Scaffolds
Contigs 72
Contig N50 281818
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449472
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7354
CDS 7288
pseudo 103
tRNA 56
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3124
Cytoplasmic Membrane 1586
Periplasmic 241
Outer Membrane 183
Extracellular 90
Unknown 1844
Unknown (This protein may have multiple localization sites) 227
Flagellar 9
Fimbrial 2

Replicons

72 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF