| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia MSMB1334WGS |
| Species | Burkholderia cepacia |
| Strain | MSMB1334WGS |
| Description/Title | Pathogen: environmental/food/other sample from Burkholderia cepacia |
| Annotated Genes | 7261 |
| Partial Genes | 105 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | unknown |
| Geographic Location | |
|---|---|
| Location Name | Australia: Northern Territory |
| Isolation Source | soil |
| Latitude/Longitude | 19.49 S 132.55 E |
| Sample Provider | |
|---|---|
| Name | Jason Sahl |
| jasonsahl@gmail.com | |
| Institution | Northern Arizona University |
| Date Collected | 2011 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 1602 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 79 |
| Contig N50 | 223961 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03449471 |
| NCBI Taxonomy ID | 292 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7261 |
| CDS | 7186 |
| pseudo | 108 |
| tRNA | 62 |
| rRNA | 9 |
| ncRNA | 3 |
| tmRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3093 |
| Cytoplasmic Membrane | 1558 |
| Periplasmic | 239 |
| Outer Membrane | 183 |
| Extracellular | 91 |
| Unknown | 1803 |
| Unknown (This protein may have multiple localization sites) | 226 |
| Flagellar | 9 |
| Fimbrial | 2 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |