Burkholderia cepacia MSMB1330WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1330WGS
Species Burkholderia cepacia
Strain MSMB1330WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 6278
Partial Genes 77
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1602
atpD
235		 trpB
53		 recA
103		 gyrB
1031		 phaC
3		 lepA
595		 gltB
455
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001530005.1
Assembly Status latest
Scaffolds
Contigs 49
Contig N50 411638
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449467
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6278
CDS 6208
pseudo 79
tRNA 58
rRNA 8
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2700
Cytoplasmic Membrane 1351
Periplasmic 218
Outer Membrane 154
Extracellular 81
Unknown 1524
Unknown (This protein may have multiple localization sites) 187
Flagellar 8
Fimbrial 2

Replicons

49 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF