Burkholderia cepacia MSMB1061WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1061WGS
Species Burkholderia cepacia
Strain MSMB1061WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 6334
Partial Genes 105
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1601
lepA
595
trpB
21
gyrB
1041
phaC
1
recA
103
atpD
1
gltB
55
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 77
Contig N50 238041
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449418
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6334
CDS 6257
pseudo 115
tRNA 65
rRNA 8
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2681
Cytoplasmic Membrane 1355
Periplasmic 225
Outer Membrane 145
Extracellular 87
Unknown 1577
Unknown (This protein may have multiple localization sites) 193
Flagellar 8
Fimbrial 3

Replicons

77 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF