Burkholderia cepacia MSMB1384WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1384WGS
Species Burkholderia cepacia
Strain MSMB1384WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 6283
Partial Genes 76
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1602
gltB
455		 atpD
235		 recA
103		 trpB
53		 lepA
595		 phaC
3		 gyrB
1031
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001529685.1
Assembly Status latest
Scaffolds
Contigs 46
Contig N50 451712
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449480
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6283
CDS 6212
pseudo 79
tRNA 61
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2704
Cytoplasmic Membrane 1354
Periplasmic 219
Outer Membrane 153
Extracellular 82
Unknown 1519
Unknown (This protein may have multiple localization sites) 188
Flagellar 8
Fimbrial 2

Replicons

46 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF