Burkholderia cepacia MSMB1339WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1339WGS
Species Burkholderia cepacia
Strain MSMB1339WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7564
Partial Genes 106
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1582
gltB
695
atpD
75
phaC
1
lepA
3
recA
1
gyrB
1030
trpB
21
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 67
Contig N50 295732
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449474
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7564
CDS 7494
pseudo 123
tRNA 62
rRNA 4
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3194
Cytoplasmic Membrane 1624
Periplasmic 263
Outer Membrane 187
Extracellular 98
Unknown 1903
Unknown (This protein may have multiple localization sites) 232
Flagellar 11
Fimbrial 2

Replicons

67 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF