Burkholderia cepacia MSMB1213WGS

Strain Overview
Organism Name Burkholderia cepacia MSMB1213WGS
Species Burkholderia cepacia
Strain MSMB1213WGS
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7404
Partial Genes 110
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1610
phaC
488
lepA
653
recA
381
trpB
640
gltB
95
gyrB
1028
atpD
6
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 78
Contig N50 305085
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449452
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7404
CDS 7339
pseudo 112
tRNA 58
rRNA 3
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3153
Cytoplasmic Membrane 1602
Periplasmic 251
Outer Membrane 180
Extracellular 99
Unknown 1837
Unknown (This protein may have multiple localization sites) 224
Flagellar 10
Fimbrial 7

Replicons

78 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF