Burkholderia cepacia MSMB1906

Strain Overview
Organism Name Burkholderia cepacia MSMB1906
Species Burkholderia cepacia
Strain MSMB1906
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7250
Partial Genes 138
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1598
trpB
637		 phaC
492		 recA
92		 atpD
532		 gyrB
1056		 lepA
57		 gltB
79
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001526445.1
Assembly Status latest
Scaffolds
Contigs 83
Contig N50 338329
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449304
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7250
CDS 7178
pseudo 145
tRNA 60
rRNA 8
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3040
Cytoplasmic Membrane 1568
Periplasmic 231
Outer Membrane 196
Extracellular 114
Unknown 1813
Unknown (This protein may have multiple localization sites) 221
Flagellar 15
Fimbrial 8

Replicons

83 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF