Burkholderia cepacia MSMB1830

Strain Overview
Organism Name Burkholderia cepacia MSMB1830
Species Burkholderia cepacia
Strain MSMB1830
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7312
Partial Genes 100
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 795
phaC
1		 atpD
4		 recA
103		 lepA
400		 gltB
386		 gyrB
572		 trpB
388
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001526345.1
Assembly Status latest
Scaffolds
Contigs 64
Contig N50 309291
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449298
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7312
CDS 7244
pseudo 104
tRNA 59
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3110
Cytoplasmic Membrane 1569
Periplasmic 241
Outer Membrane 174
Extracellular 92
Unknown 1825
Unknown (This protein may have multiple localization sites) 241
Flagellar 9
Fimbrial 3

Replicons

64 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF