Burkholderia cepacia MSMB1820

Strain Overview
Organism Name Burkholderia cepacia MSMB1820
Species Burkholderia cepacia
Strain MSMB1820
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7213
Partial Genes 135
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1620
lepA
660
phaC
52
trpB
637
gyrB
1059
atpD
528
recA
599
gltB
702
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 88
Contig N50 215484
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449294
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7213
CDS 7143
pseudo 140
tRNA 60
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3055
Cytoplasmic Membrane 1569
Periplasmic 242
Outer Membrane 188
Extracellular 97
Unknown 1775
Unknown (This protein may have multiple localization sites) 222
Flagellar 14
Fimbrial 7

Replicons

88 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF