Burkholderia cepacia MSMB1302

Strain Overview
Organism Name Burkholderia cepacia MSMB1302
Species Burkholderia cepacia
Strain MSMB1302
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7475
Partial Genes 144
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2011

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1616
gyrB
1047
gltB
702
recA
595
atpD
528
phaC
494
trpB
637
lepA
57
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 116
Contig N50 231840
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449290
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7475
CDS 7405
pseudo 155
tRNA 60
rRNA 6
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3142
Cytoplasmic Membrane 1619
Periplasmic 255
Outer Membrane 198
Extracellular 109
Unknown 1867
Unknown (This protein may have multiple localization sites) 220
Flagellar 16
Fimbrial 9
T3SS 2

Replicons

116 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF