Burkholderia cepacia INT3-BP132

Strain Overview
Organism Name Burkholderia cepacia INT3-BP132
Species Burkholderia cepacia
Strain INT3-BP132
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7657
Partial Genes 164
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1613
trpB
21		 gyrB
1037		 lepA
649		 phaC
3		 gltB
386		 recA
593		 atpD
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001525965.1
Assembly Status latest
Scaffolds
Contigs 124
Contig N50 291523
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449172
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7657
CDS 7590
pseudo 173
tRNA 60
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3252
Cytoplasmic Membrane 1656
Periplasmic 253
Outer Membrane 187
Extracellular 97
Unknown 1924
Unknown (This protein may have multiple localization sites) 228
Flagellar 9
Fimbrial 5
T3SS 2

Replicons

124 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF