Burkholderia cepacia MSMB0859

Strain Overview
Organism Name Burkholderia cepacia MSMB0859
Species Burkholderia cepacia
Strain MSMB0859
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7095
Partial Genes 100
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1614
gltB
79		 atpD
77		 trpB
637		 lepA
650		 gyrB
1039		 recA
594		 phaC
52
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001524665.1
Assembly Status latest
Scaffolds
Contigs 54
Contig N50 340673
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449282
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7095
CDS 7017
pseudo 112
tRNA 61
rRNA 13
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2989
Cytoplasmic Membrane 1564
Periplasmic 234
Outer Membrane 192
Extracellular 110
Unknown 1711
Unknown (This protein may have multiple localization sites) 222
Flagellar 13
Fimbrial 7

Replicons

54 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF