Burkholderia cepacia FL-6-3-10-S1-D0

Strain Overview
Organism Name Burkholderia cepacia FL-6-3-10-S1-D0
Species Burkholderia cepacia
Strain FL-6-3-10-S1-D0
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7439
Partial Genes 147
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name USA: Lake, FL
Isolation Source soil
Latitude/Longitude 28.5643686675786 N 81.7763850377934 W
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2012

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1583
gltB
195		 trpB
21		 gyrB
1034		 phaC
279		 lepA
573		 atpD
1		 recA
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001524125.1
Assembly Status latest
Scaffolds
Contigs 96
Contig N50 202652
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449246
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7439
CDS 7373
pseudo 148
tRNA 57
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3169
Cytoplasmic Membrane 1618
Periplasmic 259
Outer Membrane 178
Extracellular 93
Unknown 1828
Unknown (This protein may have multiple localization sites) 234
Flagellar 8
Fimbrial 4

Replicons

96 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF