Burkholderia cepacia INT1-BP277

Strain Overview
Organism Name Burkholderia cepacia INT1-BP277
Species Burkholderia cepacia
Strain INT1-BP277
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7515
Partial Genes 163
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1606
recA
325
atpD
1
trpB
21
gyrB
1036
phaC
490
gltB
386
lepA
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 129
Contig N50 240252
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449159
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 7515
CDS 7451
pseudo 169
tRNA 55
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3231
Cytoplasmic Membrane 1618
Periplasmic 248
Outer Membrane 183
Extracellular 99
Unknown 1864
Unknown (This protein may have multiple localization sites) 216
Flagellar 9
Fimbrial 6
T3SS 2

Replicons

129 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF