Burkholderia cepacia RF2-non_BP4

Strain Overview
Organism Name Burkholderia cepacia RF2-non_BP4
Species Burkholderia cepacia
Strain RF2-non_BP4
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7504
Partial Genes 180
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon, Trakam
Isolation Source soil
Latitude/Longitude 15.64 N 105.03 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1607
gltB
705		 lepA
645		 phaC
497		 recA
325		 gyrB
1051		 atpD
1		 trpB
21
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001522295.1
Assembly Status latest
Scaffolds
Contigs 172
Contig N50 221842
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449128
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7504
CDS 7417
pseudo 184
tRNA 78
rRNA 5
ncRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3162
Cytoplasmic Membrane 1590
Periplasmic 243
Outer Membrane 184
Extracellular 100
Unknown 1913
Unknown (This protein may have multiple localization sites) 232
Flagellar 8
Fimbrial 2
T3SS 1

Replicons

172 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF