Burkholderia cepacia INT1-BP232

Strain Overview
Organism Name Burkholderia cepacia INT1-BP232
Species Burkholderia cepacia
Strain INT1-BP232
Description/Title Pathogen: environmental/food/other sample from Burkholderia cepacia
Annotated Genes 7441
Partial Genes 119
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Thailand: Ubon
Isolation Source soil
Latitude/Longitude 15.42 N 104.95 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2007

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 1597
gltB
697		 atpD
1		 phaC
489		 gyrB
1035		 trpB
21		 recA
53		 lepA
1
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001522215.1
Assembly Status latest
Scaffolds
Contigs 97
Contig N50 220447
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449156
NCBI Taxonomy ID 292
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7441
CDS 7379
pseudo 126
tRNA 55
ncRNA 3
rRNA 3
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3166
Cytoplasmic Membrane 1620
Periplasmic 242
Outer Membrane 184
Extracellular 93
Unknown 1849
Unknown (This protein may have multiple localization sites) 232
Flagellar 11
Fimbrial 3

Replicons

97 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF