| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia ATCC 25416 |
| Species | Burkholderia cepacia |
| Strain | UCB 717 |
| Description/Title | Burkholderia cepacia ATCC 25416 |
| Annotated Genes | 7578 |
| Partial Genes | 72 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name | Allium cepa |
| Host Species Common Name | onion |
| Host Species Taxonomy ID | 4679 |
| Geographic Location |
|---|
| Sample Provider | |
|---|---|
| Name | Shin's Lab. |
| yun@knu.ac.kr | |
| Institution | Kyungpook National University |
| Date Collected | 1948 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 10 |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN04167160 |
| NCBI Taxonomy ID | 983594 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7578 |
| CDS | 7490 |
| pseudo | 103 |
| tRNA | 69 |
| rRNA | 18 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3204 |
| Cytoplasmic Membrane | 1602 |
| Periplasmic | 242 |
| Outer Membrane | 184 |
| Extracellular | 99 |
| Unknown | 1942 |
| Unknown (This protein may have multiple localization sites) | 224 |
| Flagellar | 2 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia cepacia ATCC 25416 strain UCB 717 chromosome 1. | 3791734 bp | 66.5% |
Replicon details
|
| Burkholderia cepacia ATCC 25416 strain UCB 717 chromosome 2. | 3408190 bp | 67.0% |
Replicon details
|
| Burkholderia cepacia ATCC 25416 strain UCB 717 chromosome 3. | 1196214 bp | 66.5% |
Replicon details
|
| Burkholderia cepacia ATCC 25416 strain UCB 717. | 209807 bp | 62.3% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |