| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cepacia LK29 |
| Species | Burkholderia cepacia |
| Strain | LK29 |
| Description/Title | Microbe sample from Burkholderia cepacia |
| Annotated Genes | 7593 |
| Partial Genes | 206 |
| Host Information |
|---|
| Geographic Location | |
|---|---|
| Location Name | Malaysia: Malacca |
| Isolation Source | Plant |
| Sample Provider | |
|---|---|
| Name | Xin Yue Chan |
| xinyuechan@gmail.com | |
| Institution | University of Malaya |
| Date Collected | 06-Jul-2010 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 1617 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 189 |
| Contig N50 | 155768 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03751789 |
| NCBI Taxonomy ID | 292 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 7593 |
| CDS | 7516 |
| pseudo | 197 |
| tRNA | 65 |
| rRNA | 10 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3172 |
| Cytoplasmic Membrane | 1612 |
| Periplasmic | 258 |
| Outer Membrane | 201 |
| Extracellular | 131 |
| Unknown | 1909 |
| Unknown (This protein may have multiple localization sites) | 236 |
| Flagellar | 25 |
| Fimbrial | 9 |
| T3SS | 5 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |