Burkholderia cenocepacia 528_BCEN

Strain Overview
Organism Name Burkholderia cenocepacia 528_BCEN
Species Burkholderia cenocepacia
Strain 528_BCEN
Description/Title Pathogen: clinical or host-associated sample from Burkholderia cenocepacia
Annotated Genes 6210
Partial Genes 2027
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease missing
Geographic Location
Location Name USA: WA
Isolation Source missing
Latitude/Longitude missing
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 242
lepA
11		 phaC
6		 trpB
12		 recA
14		 gltB
11		 gyrB
228		 atpD
16
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001071265.1
Assembly Status latest
Scaffolds
Contigs 1996
Contig N50 7192
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197723
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6210
CDS 6177
pseudo 1631
tRNA 29
rRNA 2
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2698
Cytoplasmic Membrane 1294
Periplasmic 196
Outer Membrane 130
Extracellular 80
Unknown 1680
Unknown (This protein may have multiple localization sites) 171
Flagellar 20
Fimbrial 1
T3SS 2

Replicons

1616 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF