Burkholderia cenocepacia 1167_BCEN

Strain Overview
Organism Name Burkholderia cenocepacia 1167_BCEN
Species Burkholderia cenocepacia
Strain 1167_BCEN
Description/Title Pathogen: clinical or host-associated sample from Burkholderia cenocepacia
Annotated Genes 7495
Partial Genes 918
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Host Species Disease missing
Geographic Location
Location Name USA: WA
Isolation Source missing
Latitude/Longitude missing
Sample Provider
Name Stephen Salipante
E-mail stevesal@uw.edu
Institution University of Washington
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 10
trpB
48		 phaC
4		 recA
4		 gltB
4		 gyrB
44		 lepA
4		 atpD
5
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001053975.1
Assembly Status latest
Scaffolds
Contigs 826
Contig N50 28346
Assembly Level Scaffold
Percent GC
Cross-References
NCBI BioSample Accession SAMN03197124
NCBI Taxonomy ID 95486
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 7495
CDS 7456
pseudo 667
tRNA 34
rRNA 3
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 3138
Cytoplasmic Membrane 1570
Periplasmic 235
Outer Membrane 170
Extracellular 103
Unknown 2021
Unknown (This protein may have multiple localization sites) 225
Flagellar 1

Replicons

824 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF