| Strain Overview | |
|---|---|
| Organism Name | Burkholderia cenocepacia CEIB S5-1 |
| Species | Burkholderia cenocepacia |
| Strain | CEIB S5-1 |
| Description/Title | Microbe sample from Burkholderia cenocepacia |
| Annotated Genes | 6941 |
| Partial Genes | 163 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | Mexico: Tepoztlan, Morelos |
| Isolation Source | crop soil |
| Latitude/Longitude | 18.940556 N 99.118056 W |
| Environmental Material (?) | soil |
| Sample Provider | |
|---|---|
| Name | Edgar Dantan-Gonzalez |
| edantan@uaem.mx | |
| Institution | Universidad Autonoma del Estado de Morelos |
| Date Collected | 2011-02-08 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | - |
|
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| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | 177 |
| Contig N50 | 170699 |
| Assembly Level | Contig |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03224187 |
| NCBI Taxonomy ID | 95486 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6941 |
| CDS | 6881 |
| pseudo | 196 |
| tRNA | 55 |
| rRNA | 3 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 3018 |
| Cytoplasmic Membrane | 1514 |
| Periplasmic | 225 |
| Outer Membrane | 171 |
| Extracellular | 108 |
| Unknown | 1652 |
| Unknown (This protein may have multiple localization sites) | 209 |
| Flagellar | 39 |
| Fimbrial | 10 |
| T3SS | 4 |
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |