Burkholderia anthina MSMB1496

Strain Overview
Organism Name Burkholderia anthina MSMB1496
Species Burkholderia anthina
Strain MSMB1496
Description/Title Pathogen: environmental/food/other sample from Burkholderia anthina
Annotated Genes 6536
Partial Genes 102
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc -
gltB
568
phaC
295
gyrB
858
trpB
205
recA
339
lepA
385
atpD
320
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 59
Contig N50 235593
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449334
NCBI Taxonomy ID 179879
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6536
CDS 6453
pseudo 115
tRNA 62
rRNA 16
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2816
Cytoplasmic Membrane 1390
Periplasmic 221
Outer Membrane 164
Extracellular 94
Unknown 1590
Unknown (This protein may have multiple localization sites) 189
Flagellar 24
Fimbrial 14
T3SS 4

Replicons

59 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF