Burkholderia anthina MSMB1497

Strain Overview
Organism Name Burkholderia anthina MSMB1497
Species Burkholderia anthina
Strain MSMB1497
Description/Title Pathogen: environmental/food/other sample from Burkholderia anthina
Annotated Genes 6446
Partial Genes 84
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 775
phaC
295		 trpB
205		 gyrB
554		 atpD
320		 gltB
367		 lepA
385		 recA
339
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_001527555.1
Assembly Status latest
Scaffolds
Contigs 80
Contig N50 233143
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449324
NCBI Taxonomy ID 179879
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details

Annotated Features

Feature Count
gene 6446
CDS 6372
pseudo 96
tRNA 59
rRNA 10
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2781
Cytoplasmic Membrane 1380
Periplasmic 219
Outer Membrane 160
Extracellular 91
Unknown 1566
Unknown (This protein may have multiple localization sites) 186
Flagellar 24
Fimbrial 10
T3SS 4

Replicons

80 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF