Burkholderia anthina MSMB0849

Strain Overview
Organism Name Burkholderia anthina MSMB0849
Species Burkholderia anthina
Strain MSMB0849
Description/Title Pathogen: environmental/food/other sample from Burkholderia anthina
Annotated Genes 6442
Partial Genes 96
Host Information
Host Species Taxonomic Name unknown
Geographic Location
Location Name Australia: Northern Territory
Isolation Source soil
Latitude/Longitude 19.49 S 132.55 E
Sample Provider
Name Jason Sahl
E-mail jasonsahl@gmail.com
Institution Northern Arizona University
Date Collected 2010

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bcc 775
lepA
385
phaC
295
gyrB
554
trpB
205
gltB
367
recA
339
atpD
320
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 64
Contig N50 227491
Assembly Level Contig
Percent GC
Cross-References
NCBI BioSample Accession SAMN03449278
NCBI Taxonomy ID 179879
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6442
CDS 6365
pseudo 113
tRNA 60
rRNA 12
ncRNA 4
tmRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2786
Cytoplasmic Membrane 1364
Periplasmic 219
Outer Membrane 159
Extracellular 90
Unknown 1572
Unknown (This protein may have multiple localization sites) 186
Flagellar 24
Fimbrial 10
T3SS 4

Replicons

64 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF