Burkholderia ambifaria AMMD

Strain Overview
Organism Name Burkholderia ambifaria AMMD
Species Burkholderia ambifaria
Strain AMMD
Description/Title Microbe sample Burkholderia ambifaria AMMD
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Annotated Genes 6530
Partial Genes 34
Cross-References
NCBI BioSample Accession SAMN03140296
NCBI Taxonomy ID 339670
NCBI Bioprojects
Assembly DB
RefSeq
Assembly Accession
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Genome Browsers*
Burkholderia ambifaria AMMD chromosome 1, complete sequence.
Burkholderia ambifaria AMMD chromosome 2, complete sequence.
Burkholderia ambifaria AMMD chromosome 3, complete sequence.
Burkholderia ambifaria AMMD plasmid pBII_1, complete sequence.

Annotated Features

Feature Count
gene 6530
CDS 6441
tRNA 69
pseudo 54
rRNA 18
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2886
Cytoplasmic Membrane 1378
Periplasmic 223
Outer Membrane 154
Extracellular 88
Unknown 1543
Unknown (This protein may have multiple localization sites) 200
Flagellar 19
Fimbrial 8
T3SS 4
Sample Provider
Name Shannon Johnson
E-mail shannonj@lanl.gov
Institution Los Alamos National Laboratory
Date Collected 1985
Geographic Location
Location Name USA: Wisconsin
Isolation Source Pea rhizosphere
Host Information
Host Species Taxonomic Name

Replicons

Name Length GC
Burkholderia ambifaria AMMD chromosome 1, complete sequence. 3556555 bp 66.9%
Replicon details
Burkholderia ambifaria AMMD chromosome 2, complete sequence. 2646970 bp 66.8%
Replicon details
Burkholderia ambifaria AMMD chromosome 3, complete sequence. 1281472 bp 66.5%
Replicon details
Burkholderia ambifaria AMMD plasmid pBII_1, complete sequence. 43581 bp 65.8%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TAB CSV GBK EMBL GFF3 GFF3 + sequence GTF

Download Intergenic Region Annotations

File also contains gene annotations

GTF