| Strain Overview | |
|---|---|
| Organism Name | Burkholderia ambifaria AMMD |
| Species | Burkholderia ambifaria |
| Strain | AMMD |
| Description/Title | Microbe sample Burkholderia ambifaria AMMD |
| Annotated Genes | 6530 |
| Partial Genes | 34 |
| Host Information | |
|---|---|
| Host Species Taxonomic Name |
| Geographic Location | |
|---|---|
| Location Name | USA: Wisconsin |
| Isolation Source | Pea rhizosphere |
| Sample Provider | |
|---|---|
| Name | Shannon Johnson |
| shannonj@lanl.gov | |
| Institution | Los Alamos National Laboratory |
| Date Collected | 1985 |
| Database | Scheme | Sequence Type | Alleles | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PubMLST | bcc | 77 |
|
|||||||
| Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst). | ||||||||||
| Assembly | |
|---|---|
| Assembly DB |
RefSeq
|
| Assembly Accession | Assembly Status | latest |
| Scaffolds | |
| Contigs | |
| Contig N50 | |
| Assembly Level | Complete Genome |
| Percent GC |
| Cross-References | |
|---|---|
| NCBI BioSample Accession | SAMN03140296 |
| NCBI Taxonomy ID | 339670 |
| NCBI Bioprojects |
| Related Data | |
|---|---|
| Additional Genome Project Info | |
| Sequencing Information | |
| Genome Assembly Information |
| Feature | Count |
|---|---|
| gene | 6530 |
| CDS | 6441 |
| tRNA | 69 |
| pseudo | 54 |
| rRNA | 18 |
| ncRNA | 1 |
| Localization | Count |
|---|---|
| Cytoplasmic | 2886 |
| Cytoplasmic Membrane | 1378 |
| Periplasmic | 223 |
| Outer Membrane | 154 |
| Extracellular | 88 |
| Unknown | 1543 |
| Unknown (This protein may have multiple localization sites) | 200 |
| Flagellar | 19 |
| Fimbrial | 8 |
| T3SS | 4 |
| Name | Length | GC | |
|---|---|---|---|
| Burkholderia ambifaria AMMD chromosome 1, complete sequence. | 3556555 bp | 66.9% |
Replicon details
|
| Burkholderia ambifaria AMMD chromosome 2, complete sequence. | 2646970 bp | 66.8% |
Replicon details
|
| Burkholderia ambifaria AMMD chromosome 3, complete sequence. | 1281472 bp | 66.5% |
Replicon details
|
| Burkholderia ambifaria AMMD plasmid pBII_1, complete sequence. | 43581 bp | 65.8% |
Replicon details
|
| Genomic | ORF DNA | Intergenic | Amino Acid |
| TSV | CSV | GBK | EMBL | GFF3 | GFF3 + sequence | GTF |