Burkholderia sp. RPE64 RPE64

Strain Overview
Organism Name Burkholderia sp. RPE64
Species Burkholderia sp. RPE64
Strain RPE64
Description/Title Burkholderia sp. RPE64 PacBio
Annotated Genes 6358
Partial Genes 231
Host Information
Host Species Taxonomic Name
Geographic Location
Sample Provider
Name
E-mail
Institution Division of Evolutionary Biology
Date Collected

MLST Data

Database Scheme Sequence Type Alleles
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000402035.1
Assembly Status latest
Scaffolds
Contigs
Contig N50
Assembly Level Complete Genome
Percent GC
Cross-References
NCBI BioSample Accession SAMD00012854
NCBI Taxonomy ID 758793
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia sp. RPE64 DNA, chromosome 1, complete genome.
Burkholderia sp. RPE64 DNA, chromosome 2, complete genome.
Burkholderia sp. RPE64 DNA, chromosome 3, complete genome.
Burkholderia sp. RPE64 plasmid p1 DNA, complete genome.
Burkholderia sp. RPE64 plasmid p2 DNA, complete genome.

Annotated Features

Feature Count
gene 6358
CDS 6256
tRNA 57
rRNA 15
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2861
Cytoplasmic Membrane 1392
Periplasmic 207
Outer Membrane 114
Extracellular 84
Unknown 1459
Unknown (This protein may have multiple localization sites) 139
Flagellar 21
Fimbrial 7

Replicons

5 replicons associated with this assembly

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF