Burkholderia pseudomallei MSHR435

Strain Overview
Organism Name Burkholderia pseudomallei MSHR435
Species Burkholderia pseudomallei
Strain MSHR435
Description/Title Microbe sample from Burkholderia pseudomallei MSHR435
Annotated Genes 6182
Partial Genes 132
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Australia
Isolation Source clinical isolate
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei -
ndh
15		 lepA
1		 ace
-		 narK
9		 lipA
15		 gmhD
20		 gltB
14
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
GCF_000775165.1
Assembly Status latest
Scaffolds
Contigs 65
Contig N50 237437
Assembly Level Chromosome
Percent GC
Cross-References
NCBI BioSample Accession SAMN02999478
NCBI Taxonomy ID 1435985
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information
Details
Genome Browsers*
Burkholderia pseudomallei MSHR435 chromosome 1, whole genome shotgun sequence.
Burkholderia pseudomallei MSHR435 chromosome 2, whole genome shotgun sequence.

Annotated Features

Feature Count
gene 6182
CDS 5968
pseudo 145
tRNA 55
rRNA 10
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2474
Cytoplasmic Membrane 1191
Periplasmic 187
Outer Membrane 138
Extracellular 99
Unknown 1748
Unknown (This protein may have multiple localization sites) 168
Flagellar 21
Fimbrial 5
T3SS 1

Replicons

Name Length GC
Burkholderia pseudomallei MSHR435 chromosome 1, whole genome shotgun sequence. 3837469 bp 67.7%
Replicon details
Burkholderia pseudomallei MSHR435 chromosome 2, whole genome shotgun sequence. 3295773 bp 68.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF