Burkholderia pseudomallei MSHR1153

Strain Overview
Organism Name Burkholderia pseudomallei MSHR1153
Species Burkholderia pseudomallei
Strain MSHR1153
Description/Title Microbe sample from Burkholderia pseudomallei MSHR1153
Annotated Genes 6243
Partial Genes 79
Host Information
Host Species Taxonomic Name Homo sapiens
Host Species Common Name human
Host Species Taxonomy ID 9606
Geographic Location
Location Name Australia
Isolation Source clinical isolate
Sample Provider
Name Hajnalka Daligault
E-mail hajkis@lanl.gov
Institution Los Alamos National Laboratory
Date Collected unknown

MLST Data

Database Scheme Sequence Type Alleles
PubMLST bpseudomallei 117
lepA
14
gmhD
13
narK
22
lipA
8
ndh
11
ace
1
gltB
4
Strains have MLST sequence types assigned when available. They are currently based on schemes at the PubMLST website (https://pubmlst.org/) developed by Keith Jolley (Jolley & Maiden 2010, BMC Bioinformatics, 11:595) that were predicted by the "mlst" software developed by Torsten Seemann (Github https://github.com/tseemann/mlst).
Assembly
Assembly DB
RefSeq
Assembly Accession
Assembly Status latest
Scaffolds
Contigs 2
Contig N50 4032226
Assembly Level Chromosome with gaps
Percent GC
Cross-References
NCBI BioSample Accession SAMN03008919
NCBI Taxonomy ID 1437000
NCBI Bioprojects
Related Data
Additional Genome Project Info
Sequencing Information
Genome Assembly Information

Annotated Features

Feature Count
gene 6243
CDS 6072
pseudo 98
tRNA 60
rRNA 12
ncRNA 1

Subcellular Localization

Localization Count
Cytoplasmic 2519
Cytoplasmic Membrane 1224
Periplasmic 200
Outer Membrane 136
Extracellular 102
Unknown 1747
Unknown (This protein may have multiple localization sites) 183
Flagellar 33
Fimbrial 7
T3SS 5

Replicons

Name Length GC
Burkholderia pseudomallei MSHR1153 chromosome 1, complete sequence. 4032226 bp 67.9%
Replicon details
Burkholderia pseudomallei MSHR1153 chromosome 2. 3280677 bp 68.2%
Replicon details

Download Sequences

Genomic ORF DNA Intergenic Amino Acid

Download Gene Annotations

TSV CSV GBK EMBL GFF3 GFF3 + sequence GTF